2024 Fungi Bioinformatics Workshop
bpa-bioinformatics-workshop
Live organisation list from the BPA CKAN Action API.
bpa-bioinformatics-workshop
Coxiella burnetii
Moraxella spp.
Vibrio tasmaniensis, Vibrio pomeroyi, Vibrio atlanticus
Trypanosoma spp.
Teladorsagia circumcincta
Marteilia sydneyi (taxid 98371)
Apis mellifera (Western Honey bee), Varroa destructor (honey bee mite)
Tetragonula carbonaria (Australian Sugarbag bee)
Australian tick species from the understudied subgenus Sternalixodes: Ixodes cornuatus, I. myrmecobii (the numbat tick), I. confusus, I. hirsti, and I. trichosuri (the brushtail p…
Dragon lizard
Phascolarctos cinereus/Koala
marsupial (multiple)
Northern Hairy-nosed Wombat (Lasiorhinus krefftii); Shark Bay bandicoot (Perameles bougainville)
Macropus giganteus (Eastern grey kangaroo), Anas platyrhynchos (Wild ducks), Canis lupus familiaris (Domestic dogs)
Phascolarctos cinereus (Koala), Macropus giganteus (Eastern Grey Kangaroo), Trichosurus vulpecula (Common Brushtail Possum), Trichoglossus moluccanus (Rainbow Lorikeet), Spilopeli…
Users in this organization will have access to all AM data, including embargoed data.
Organisation for members of the AM CSIRO Team and relevant BPA staff
Temporary area for assembly and binning of Marine Microbes data.
ad-consortium-members
## Consortium Publication & Data Access The data from this initiative has been published and is publicly accessible from Nature Communications. https://www.nature.com/articles/s41…
anu-abc-upload
The ARC Centre of Excellence for Innovations in Peptide and Protein Science (CIPPS) is a national research centre funded through the Australian Research Council's Centres of Excel…
The Australian Amphibian and Reptile Genomics Initiative (AusARG) is a national collaborative project that that will facilitate research using genomics approaches towards a more t…
ausarg-consortium-members
animal-disease
The Australian Avian Genomics Initiative aims to build a foundation of genomic data, including phylogenomics, reference genomes, population genetics, to advance our understanding…
aus-avian-consortium-members
The Australian Fish Genomics Initiative aims to build a foundation of genomic data, including phylogenomics, reference genomes, population genetics, to advance our understanding a…
aus-fish-consortium-members
The Australian Grasslands Initiative is a national collaborative project, which aims to identify mechanisms of adaptation in grasses to Australia's diverse range of soils and clim…
The Australian Venom Innovation and Discovery (AVID) Initiative is a national collaborative effort to generate high-quality genomic, transcriptomic, and proteomic data for Austral…
aus-venom-consortium-members
Of the estimated 10 million species that exist on our planet, only just over a million have so far been identified and described. Using traditional taxonomy, it would take at leas…
Use for Biocommons Access Threatend Species Bundle access
bpa-bioinformatics-workshop-consortium-members
The Biomes of Australian Soil Environments (BASE) is a collaborative project to create a public resource containing microbial genome information from a range of Australian soil en…
Bioplatforms Australia enables innovation and collaboration through investments in world class infrastructure and expertise.
bpa-collaborations
A holding area for documents linked from project documentation.
bpa-sample-data
bpa-sample-data-consortium-members
cane-toad-collaboration-members
cipps-consortium-members
Sequencing on Bandicoot
Sequencing on Bilby specimen
Sequencing on Corroboree Frog
Sequencing on Devil specimen
Sequencing on Dugong specimen
Sequencing on Koala specimen
Sequencing on Kowari
Sequencing on Mountain pygmy-possum
Sequencing on Numbat specimen
Sequencing on Oyster specimen
Sequencing on Platypus specimen
Sequencing on Victorian grassland earless dragon specimen
Sequencing on Western swamp turtle specimen
The fungal kingdom sits taxonomically separated from plants and animals. They have unique characteristics including structure, metabolites, nutritional properties and ecological f…
fungi-consortium-members
gap-consortium-members
###Citation Guidelines __Bioplatforms Initiative DOI__: - The Genomics for Australian Plants (GAP) Framework Initiative – developing genomic resources for understanding the evolut…
The Genomics for Forest Resilience Initiative a national collaborative project which seeks to accelerate the creation of referential and population genomic data for Australia’s fo…
forest-resilience-consortium-members
grassland-consortium-members
The Sea-quence Project is generating core genetic data for corals from the Great Barrier Reef and Red Sea to ultimately help guide reef management practices. The project aims to s…
incoming-data
The Integrated Pest Management Omics initiative is a national program set to transform our understanding of Australia’s diverse pest and beneficial insect populations and will pla…
bpa-ipm-consortium-members
The Marine Microbes Project will establish how Australia's marine microbial communities change over time in various locations and habitats. The consortium of researchers will inve…
The Melanoma Genomics Project aims to obtain whole genome sequences from approximately 500 melanoma patients. The samples sequenced include brain, lymph, primary and metastatic tu…
Users in this organization will have access to all OMG data, including embargoed data.
## Introduction ###New website We now have a dedicated website for the Oz Mammals Genomics Initiative: please visit https://ozmammalsgenomics.com/ for more information. ###About T…
The Plant Pathogen ‘Omics Initiative is a national collaborative project, which aims to generate high quality molecular reference data for plant pathogens in Australia to support…
pp-consortium-members
The Plant Protein Atlas Initiative will use targeted ‘omics technologies, including genomics, proteomics, metabolomics and phenomics (with the NCRIS-enabled Australian Plant Pheno…
ppa-consortium-members
platypus-bio-collaboration-members
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Method development for lilly pilli and myrtle rust co-sequencing (metagenomics) - Austropuccinia psidii (fungi) + Syzygium luehmannii (host)
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##Access to datasets from Stemformatics For access to the Stem cells data, please go to [Stemformatics.](https://www.stemformatics.org/#). Access to the datasets is not provided v…
[_Additional instructions on processed data functionalities_](https://data.bioplatforms.com/organization/pages/australian-microbiome/processed) [_Australian Microbiome processed d…
The Threatened Species Initiative (TSI) will create a national library of genomic data to support decision-making for biodiversity conservation. The program brings together genome…
tsi-consortium-members
This dataset contains genomic sequence information from 16 wheat varieties of importance to Australia selected and prioritised by the major stakeholders of the Australian grains r…
This dataset contains the genomic sequence from 10 fungal and 2 bacterial pathogen species. Among the pathogens sequenced are the causal agents of stripe rust, stem rust, tan spot…
This dataset contains transcript sequence data from 8 different fungal pathogen species of wheat. The samples analysed cover various developmental stages of the pathogens and thei…